discretizeAll {macat} | R Documentation

## Discretize complete expression matrix

### Description

perform discretization on all chromosomes and write python flat files

### Usage

    discretizeAll(data, margin = 10)

### Arguments

`data` | MACATData Object
`margin` | symmetric quantile in percent

### Details

The filename for the python flat files are `discrete_seqs_margin_<margin>_chrom_<chrom>.py` where <chrom> and <margin> are the names of the chromosome and the margin used for discretization. For details on the discretization see `discretize`.

### Value

produces python flat file

### Author(s)

The MACAT Development team

### See Also

`discretize`

### Examples

     # !!! takes some time !!!
     ## Not run:
      #loaddatapkg("stjudem")
      data(stjd)
      discretizeAll(stjd, margin=10)

    ## End(Not run)

[Package macat version 1.18.0 Index]