A B C D E F G I L M S T U W misc
activeView | Accessing the active view |
activeView,argoSession-method | Accessing the active view |
activeView,argoView-method | Accessing the active view |
activeView,browserSession-method | Accessing the active view |
activeView,ucscView-method | Accessing the active view |
activeView-methods | Accessing the active view |
activeView<-,argoSession-method | Accessing the active view |
activeView<--methods | Accessing the active view |
argoSession-class | Class "argoSession" |
argoView-class | Class "argoView" |
basicTrackLine-class | Class "basicTrackLine" |
browseGenome | Browse a genome |
browseGenome,ANY-method | Browse a genome |
browserSession | Get a genome browser session |
browserSession,browserView-method | Get a genome browser session |
browserSession,character-method | Get a genome browser session |
browserSession-class | Class "browserSession" |
browserSession-methods | Get a genome browser session |
browserView | Getting browser views |
browserView,argoSession-method | Getting browser views |
browserView,ucscSession-method | Getting browser views |
browserView-class | Class "browserView" |
browserView-methods | Getting browser views |
browserViews | Getting the browser views |
browserViews,argoSession-method | Getting the browser views |
browserViews,ucscSession-method | Getting the browser views |
browserViews-methods | Getting the browser views |
chrid | Getting chromosome ids |
chrid,ANY-method | Getting chromosome ids |
chrid,character-method | Getting chromosome ids |
chrid,trackSet-method | Getting chromosome ids |
chrid-class | Class "chrid" |
chrid-methods | Getting chromosome ids |
close,argoSession-method | Class "argoSession" |
close,argoView-method | Class "argoView" |
coerce,basicTrackLine,character-method | Class "basicTrackLine" |
coerce,basicTrackLine,wigTrackLine-method | Class "wigTrackLine" |
coerce,character,basicTrackLine-method | Class "basicTrackLine" |
coerce,character,ucscTrackLine-method | Class "ucscTrackLine" |
coerce,character,wigTrackLine-method | Class "wigTrackLine" |
coerce,trackSet,data.frame-method | Class "trackSet" |
coerce,ucscTrackLine,character-method | Class "ucscTrackLine" |
coerce,wigTrackLine,basicTrackLine-method | Class "wigTrackLine" |
coerce,wigTrackLine,character-method | Class "wigTrackLine" |
dataVals | Get data values |
dataVals,trackSet-method | Get data values |
dataVals-methods | Get data values |
export | Export objects to connections |
export,ANY,ANY,character-method | Export objects to connections |
export,ANY,character,character-method | Export objects to connections |
export,ANY,character,missing-method | Export objects to connections |
export,ANY,missing,character-method | Export objects to connections |
export.bed | Export tracks |
export.bed,trackSet-method | Export tracks |
export.bed,ucscTrackSet-method | Class "ucscTrackSet" |
export.gff | Export tracks |
export.gff,trackSet-method | Export tracks |
export.gff,ucscTrackSet-method | Class "ucscTrackSet" |
export.gff1 | Export tracks |
export.gff1,ANY-method | Export tracks |
export.gff2 | Export tracks |
export.gff2,ANY-method | Export tracks |
export.gff3 | Export tracks |
export.gff3,ANY-method | Export tracks |
export.ucsc | Export tracks |
export.ucsc,trackSet-method | Export tracks |
export.ucsc,trackSets-method | Export tracks |
export.ucsc,ucscTrackSet-method | Class "ucscTrackSet" |
export.wig | Export tracks |
export.wig,trackSet-method | Export tracks |
featChrom | Get track feature variables |
featChrom,trackSet-method | Get track feature variables |
featEnd | Get track feature variables |
featEnd,trackSet-method | Get track feature variables |
featStart | Get track feature variables |
featStart,trackSet-method | Get track feature variables |
featStrand | Get track feature variables |
featStrand,trackSet-method | Get track feature variables |
genomeBrowsers | Get available genome browsers |
genomeSegment | Accessing a segment of a genome |
genomeSegment,argoView-method | Accessing a segment of a genome |
genomeSegment,browserSession-method | Accessing a segment of a genome |
genomeSegment,character-method | Accessing a segment of a genome |
genomeSegment,missing-method | Accessing a segment of a genome |
genomeSegment,trackSet-method | Accessing a segment of a genome |
genomeSegment,trackSets-method | Accessing a segment of a genome |
genomeSegment,ucscCart-method | Accessing a segment of a genome |
genomeSegment,ucscSession-method | Accessing a segment of a genome |
genomeSegment,ucscView-method | Accessing a segment of a genome |
genomeSegment-class | Class "genomeSegment" |
genomeSegment-methods | Accessing a segment of a genome |
genomeSegment<-,argoView-method | Accessing a segment of a genome |
genomeSegment<-,ucscView-method | Accessing a segment of a genome |
genomeSequence | Retrieving a genome sequence |
genomeSequence,argoSession-method | Retrieving a genome sequence |
genomeSequence,ucscSession-method | Retrieving a genome sequence |
genomeSequence-methods | Retrieving a genome sequence |
import | Importing objects |
import,ANY,character,ANY-method | Importing objects |
import,character,character,ANY-method | Importing objects |
import,character,missing,ANY-method | Importing objects |
import,missing,ANY,character-method | Importing objects |
import.bed | Importing tracks |
import.bed,ANY-method | Importing tracks |
import.gff | Importing tracks |
import.gff,ANY-method | Importing tracks |
import.gff1 | Importing tracks |
import.gff1,ANY-method | Importing tracks |
import.gff2 | Importing tracks |
import.gff2,ANY-method | Importing tracks |
import.gff3 | Importing tracks |
import.gff3,ANY-method | Importing tracks |
import.ucsc | Importing tracks |
import.ucsc,ANY-method | Importing tracks |
import.wig | Importing tracks |
import.wig,ANY-method | Importing tracks |
initialize,argoSession-method | Class "argoSession" |
initialize,trackSet-method | Class "trackSet" |
initialize,ucscSession-method | Class "ucscSession" |
laySequence | Load a sequence |
laySequence,argoSession,character-method | Load a sequence |
laySequence-methods | Load a sequence |
layTrack | Laying tracks |
layTrack,argoSession,trackSet-method | Laying tracks |
layTrack,browserSession,trackSet-method | Laying tracks |
layTrack,browserSession,trackSets-method | Laying tracks |
layTrack,ucscSession,trackSets-method | Laying tracks |
layTrack-methods | Laying tracks |
merge,genomeSegment,genomeSegment-method | Class "genomeSegment" |
show,browserSession-method | Class "browserSession" |
show,browserView-method | Class "browserView" |
trackData | Get track data |
trackData,trackSet-method | Get track data |
tracks | Accessing track names |
tracks,argoSession-method | Accessing track names |
tracks,argoView-method | Accessing track names |
tracks,ucscSession-method | Accessing track names |
tracks,ucscTrackModes-method | Accessing track names |
tracks,ucscView-method | Accessing track names |
tracks-methods | Accessing track names |
tracks<-,argoView-method | Accessing track names |
tracks<-,ucscTrackModes-method | Accessing track names |
tracks<-,ucscView-method | Accessing track names |
tracks<--methods | Accessing track names |
trackSet | Get a trackSet |
trackSet,argoSession-method | Get a trackSet |
trackSet,ucscSession-method | Get a trackSet |
trackSet-class | Class "trackSet" |
trackSet-methods | Get a trackSet |
trackSets | Getting a list of trackSets |
trackSets,list-method | Getting a list of trackSets |
trackSets,missing-method | Getting a list of trackSets |
trackSets,trackSet-method | Getting a list of trackSets |
trackSets-class | Class "trackSets" |
trackSets-methods | Getting a list of trackSets |
ucscSession-class | Class "ucscSession" |
ucscTable | Get a database table from UCSC |
ucscTable,ucscSession-method | Get a database table from UCSC |
ucscTrackLine-class | Class "ucscTrackLine" |
ucscTrackModes | Accessing UCSC track modes |
ucscTrackModes,character-method | Accessing UCSC track modes |
ucscTrackModes,missing-method | Accessing UCSC track modes |
ucscTrackModes,ucscSession-method | Accessing UCSC track modes |
ucscTrackModes,ucscTracks-method | Accessing UCSC track modes |
ucscTrackModes,ucscView-method | Accessing UCSC track modes |
ucscTrackModes-class | Class "ucscTrackModes" |
ucscTrackModes-methods | Accessing UCSC track modes |
ucscTrackModes<-,ucscView,character-method | Accessing UCSC track modes |
ucscTrackModes<-,ucscView,ucscTrackModes-method | Accessing UCSC track modes |
ucscTrackModes<--methods | Accessing UCSC track modes |
ucscTrackSet-class | Class "ucscTrackSet" |
ucscView-class | Class "ucscView" |
wigTrackLine-class | Class "wigTrackLine" |
[,trackSet-method | Class "trackSet" |
[.trackSet | Class "trackSet" |