topSnps-methods {GGtools}R Documentation

report on the smallest p-values for SNP-expression associations

Description

report on the smallest p-values for SNP-expression associations

Methods

x = "cwSnpScreenResult"
return a data frame with the smallest p-values. An optional argument which = 'p.2df' allows selection of 2-d.f. test results.
x = "gwSnpScreenResult"
return a list of chromosome-specific data frames with the smallest p-values. An optional argument which = 'p.2df' allows selection of 2-d.f. test results.

Examples

 data(hmceuB36.2021)
 g1 = gwSnpScreen(genesym("CPNE1"), hmceuB36.2021, chrnum(20))
 topSnps(g1)

[Package GGtools version 2.0.2 Index]