gwSnpScreenResult-class {GGtools} | R Documentation |
Class "gwSnpScreenResult" – containers for genome-wide and chromosome-wide snp screen statistics
Objects can be created by calls of the form new("gwSnpScreenResult", ...)
.
Mild extensions to 'list'.
.Data
:"list"
list of
data.frames or matrices of test results gene
:"character"
gene name psid
:"character"
probe identifier annotation
:"character"
– propagated
from smlSet snpLocExtRef
:"character"
, full pathname
of external store for snp locations relevant to the smlSet instance from
which gwSnpScreenResult was computed.
Class "list"
, from data part.
Class "vector"
, by class "list", distance 2.
Class "AssayData"
, by class "list", distance 2.
signature(x = "gwSnpScreenResult", y = "ANY")
:
plots minus log p values of association tests along chromosomal
coordinatessignature(object = "gwSnpScreenResult")
: brief report signature(object = "gwSnpScreenResult")
: restricts
chromosomes represented VJ Carey <stvjc@channing.harvard.edu>
showClass("gwSnpScreenResult") data(hmceuB36.2021) objects("package:GGBase") x = gwSnpScreen(genesym("CPNE1"), hmceuB36.2021, chrnum(20)) x