snpLocNCref-class {GGtools}R Documentation

Class "snpLocNCref" container for netCDF reference to snp location data

Description

Class "snpLocNCref" container for netCDF reference to snp location data

Objects from the Class

Objects can be created by calls of the form new("snpLocNCref", ...). They extend class character.

Slots

.Data:
Object of class "character" intended to be the pathname of the netCDF store for snp location information. This store will have two variables: chr (integer denoting chromosome, in humans 23=X, 24=Y), and cumloc (numeric cumulative base pair count to SNP location).

Extends

Class "character", from data part. Class "vector", by class "character", distance 2. Class "characterORMIAME", by class "character", distance 2.

Methods

getSnpData
signature(x = "snpLocNCref"): returns list with elements chr and cumloc
show
signature(object = "snpLocNCref"): returns concise string as pathname may be long.

Author(s)

VJ Carey <stvjc@channing.harvard.edu>

Examples

showClass("snpLocNCref")

[Package GGtools version 2.0.2 Index]