topSnps-methods {GGtools} | R Documentation |
report on the smallest p-values for SNP-expression associations
Description
report on the smallest p-values for SNP-expression associations
Methods
- x = "cwSnpScreenResult"
- return a data frame with the
smallest p-values. An optional argument
which = 'p.2df'
allows
selection of 2-d.f. test results.
- x = "gwSnpScreenResult"
- return a list of chromosome-specific
data frames with the
smallest p-values. An optional argument
which = 'p.2df'
allows
selection of 2-d.f. test results.
Examples
data(hmceuB36.2021)
g1 = gwSnpScreen(genesym("CPNE1"), hmceuB36.2021, chrnum(20))
topSnps(g1)
[Package
GGtools version 2.0.2
Index]