plot_EvG-methods {GGtools}R Documentation

plot expression vs. genotype

Description

plot expression vs. genotype ; getAlleles is supporting infrastructure that may have additional uses

Methods

gsym = "genesym", rsn = "rsNum", sms = "smlSet"
displays distributions of gene expression values for gene identified by gsym (which must be a symbol identified in the [platform]SYMBOL AnnDbBimap for the smlSet annotation) stratified by SNP genotype for SNP identified by rsn.
getAlleles(sms="smlSet", rsn="rsNum")
return character tokens describing subject-specific genotypes

Examples

data(hmceuB36.2021)
plot_EvG( genesym("CPNE1"), rsNum("rs6060535"), hmceuB36.2021 )
getAlleles(hmceuB36.2021, rsNum("rs6060535"))[1:5]

[Package GGtools version 2.0.2 Index]