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| tilingArray-package | tilingArray package overview |
| BGindex | Find the index of the exact match (PM) or background probes from a probeAnno environment |
| breakpoints.breakpointsPretend | Accessor methods for breakpointsPretend objects - not to be called by the user. |
| comparisonPlot | Plot a vertical layout of panels for the comparison of different along-chromosome profiles. |
| confint | The class segmentation represents a segmentation result. |
| confint,segmentation-method | The class segmentation represents a segmentation result. |
| costMatrix | Segmentation cost matrix |
| findSegments | Fit a piecewise constant curve to a sequence of numbers - OBSOLETE, please use function segment instead. |
| logLik | The class segmentation represents a segmentation result. |
| logLik,segmentation-method | The class segmentation represents a segmentation result. |
| normalizeByReference | Probe-specific normalization of hybridization intensities from an oligonucleotide microarray |
| otherStrand | Return the name of the opposite strand |
| plot,segmentation-method | The class segmentation represents a segmentation result. |
| plotAlongChrom | Plot signals and segmentation for a region of a chromosome |
| plotAlongChromLegend | Plot a legend for genomic features |
| plotFeatures | Plot genomic features for a region along a chromosome |
| plotSegmentationDots | Plot points for a region along a chromosome |
| plotSegmentationHeatmap | Plot a heatmap diagram for a region along a chromosome |
| PMindex | Find the index of the exact match (PM) or background probes from a probeAnno environment |
| posMin | Find the smallest positive number in a vector |
| qcPlots | Generate simple diagnostic plots for Affymetrix tiling array data |
| readCel2eSet | Read celfiles into an ExpressionSet object. |
| residuals.breakpointsPretend | Accessor methods for breakpointsPretend objects - not to be called by the user. |
| sampleStep | Sampling of ascending numbers to ensure minimal spacing. |
| segChrom | Fit a piecewise constant curve to along chromosome data |
| segment | Fit a piecewise constant curve: segmentation by dynamic programming |
| segmentation-class | The class segmentation represents a segmentation result. |
| show,segmentation-method | The class segmentation represents a segmentation result. |
| tilingArray | tilingArray package overview |