maTwoSamples {marray} | R Documentation

## Changing signs for two sample analysis

### Description

Taking target file information and flip the dye swaps experiments.

### Usage

    maTwoSamples(targetfile, normdata, Trt, Ctl, targetID = "TargetName", slidesID = "Slides", dyesID = "Dyes", RedID = 5, path = ".", output = TRUE)

### Arguments

`targetfile` | A data.frame containing target samples information.
`normdata` | A R object of class 'marrayNorm'
`Trt` | A character string representing "treatment" sample.
`Ctl` | A character string representing "controls" sample.
`targetID` | A character string representing the column name in 'targetfile' containing target samples information.
`slidesID` | A character string representing the column name in 'targetfile' containing the slide label.
`dyesID` | A character string representing the column name in 'targetfile' containing dye labeled information.
`RedID` | The character use to represent the Cy5 dye.
`path` | A character string representing the data directory. By default this is set to the current working directory (".").
`output` | Save and tab delimited file

### Value

An objects of 'marrayNorm' with the dye assignment adjusted.

### Author(s)

Yee Hwa (Jean) Yang

[Package marray version 1.12.0 Index]