## R version 4.5.1 (2025-06-13)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.3 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.22-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-serial/liblapack.so.3; LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] BulkSignalR_1.1.4
##
## loaded via a namespace (and not attached):
## [1] DBI_1.2.3 bitops_1.0-9
## [3] grr_0.9.5 gridExtra_2.3
## [5] httr2_1.2.1 rlang_1.1.6
## [7] magrittr_2.0.3 clue_0.3-66
## [9] GetoptLong_1.0.5 matrixStats_1.5.0
## [11] compiler_4.5.1 RSQLite_2.4.2
## [13] gprofiler2_0.2.3 png_0.1-8
## [15] vctrs_0.6.5 ggalluvial_0.12.5
## [17] pkgconfig_2.0.3 SpatialExperiment_1.19.1
## [19] shape_1.4.6.1 crayon_1.5.3
## [21] fastmap_1.2.0 backports_1.5.0
## [23] dbplyr_2.5.0 magick_2.8.7
## [25] XVector_0.49.0 rmarkdown_2.29
## [27] purrr_1.1.0 bit_4.6.0
## [29] xfun_0.52 glmnet_4.1-10
## [31] cachem_1.1.0 aplot_0.2.8
## [33] jsonlite_2.0.0 blob_1.2.4
## [35] DelayedArray_0.35.2 broom_1.0.9
## [37] parallel_4.5.1 cluster_2.1.8.1
## [39] R6_2.6.1 bslib_0.9.0
## [41] RColorBrewer_1.1-3 car_3.1-3
## [43] GenomicRanges_1.61.1 jquerylib_0.1.4
## [45] Rcpp_1.1.0 Seqinfo_0.99.2
## [47] SummarizedExperiment_1.39.1 iterators_1.0.14
## [49] knitr_1.50 IRanges_2.43.0
## [51] Matrix_1.7-3 splines_4.5.1
## [53] igraph_2.1.4 tidyselect_1.2.1
## [55] dichromat_2.0-0.1 abind_1.4-8
## [57] yaml_2.3.10 doParallel_1.0.17
## [59] codetools_0.2-20 curl_6.4.0
## [61] lattice_0.22-7 tibble_3.3.0
## [63] withr_3.0.2 treeio_1.33.0
## [65] Biobase_2.69.0 evaluate_1.0.4
## [67] Rtsne_0.17 gridGraphics_0.5-1
## [69] survival_3.8-3 BiocFileCache_2.99.5
## [71] circlize_0.4.16 ggtree_3.17.1
## [73] pillar_1.11.0 ggpubr_0.6.1
## [75] filelock_1.0.3 carData_3.0-5
## [77] MatrixGenerics_1.21.0 foreach_1.5.2
## [79] stats4_4.5.1 plotly_4.11.0
## [81] ggfun_0.2.0 generics_0.1.4
## [83] RCurl_1.98-1.17 S4Vectors_0.47.0
## [85] ggplot2_3.5.2 tidytree_0.4.6
## [87] scales_1.4.0 glue_1.8.0
## [89] orthogene_1.15.0 lazyeval_0.2.2
## [91] tools_4.5.1 data.table_1.17.8
## [93] ggsignif_0.6.4 babelgene_22.9
## [95] RANN_2.6.2 fs_1.6.6
## [97] grid_4.5.1 ape_5.8-1
## [99] tidyr_1.3.1 colorspace_2.1-1
## [101] SingleCellExperiment_1.31.1 patchwork_1.3.1
## [103] nlme_3.1-168 homologene_1.4.68.19.3.27
## [105] Formula_1.2-5 cli_3.6.5
## [107] rappdirs_0.3.3 viridisLite_0.4.2
## [109] S4Arrays_1.9.1 ComplexHeatmap_2.25.2
## [111] dplyr_1.1.4 gtable_0.3.6
## [113] stabledist_0.7-2 yulab.utils_0.2.0
## [115] rstatix_0.7.2 sass_0.4.10
## [117] digest_0.6.37 BiocGenerics_0.55.1
## [119] ggplotify_0.1.2 SparseArray_1.9.1
## [121] ggrepel_0.9.6 htmlwidgets_1.6.4
## [123] rjson_0.2.23 farver_2.1.2
## [125] memoise_2.0.1 htmltools_0.5.8.1
## [127] multtest_2.65.0 lifecycle_1.0.4
## [129] httr_1.4.7 GlobalOptions_0.1.2
## [131] bit64_4.6.0-1 MASS_7.3-65