Package: ChIPexoQual
Type: Package
Title: ChIPexoQual
Version: 1.33.0
Author: Rene Welch, Dongjun Chung, Sunduz Keles
Maintainer: Rene Welch <welch@stat.wisc.edu>
Authors@R: c(person(given = "Dongjun", family = "Chung", role = "aut"),
        person(given = "Sunduz",family = "Keles",role = "aut"),
        person(given = "Rene", family = "Welch", role = c("aut",
        "cre"), email = "[welch@stat.wisc.edu]"))
Description: Package with a quality control pipeline for ChIP-exo/nexus
        data.
URL: https:github.com/keleslab/ChIPexoQual
BugReports: https://github.com/welch16/ChIPexoQual/issues
License: GPL (>=2)
Depends: R (>= 3.5.0), GenomicAlignments (>= 1.0.1)
Imports: methods, utils, GenomeInfoDb, stats, BiocParallel,
        GenomicRanges (>= 1.14.4), ggplot2 (>= 1.0), data.table (>=
        1.9.6), Rsamtools (>= 1.16.1), IRanges (>= 1.6), S4Vectors (>=
        0.8), biovizBase (>= 1.18), broom (>= 0.4), RColorBrewer (>=
        1.1), dplyr (>= 0.5), scales (>= 0.4.0), viridis (>= 0.3),
        hexbin (>= 1.27), rmarkdown
Suggests: ChIPexoQualExample (>= 0.99.1), knitr (>= 1.10), BiocStyle,
        gridExtra (>= 2.2), testthat
VignetteBuilder: knitr
biocViews: ChIPSeq, Sequencing, Transcription, Visualization,
        QualityControl, Coverage, Alignment
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/ChIPexoQual
git_branch: devel
git_last_commit: 5fa1711
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-04 22:07:19 UTC; biocbuild
Built: R 4.5.0; ; 2025-06-05 12:39:50 UTC; windows
