Tools for making TxDb objects from genomic annotations

---

Documentation for package ‘txdbmaker’ version 1.5.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

txdbmaker-package	Tools for making TxDb objects from genomic annotations
browseUCSCtrack	Make a TxDb object from annotations available at the UCSC Genome Browser
getChromInfoFromBiomart	Make a TxDb object from annotations available on a BioMart database
makeFDbPackageFromUCSC	Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
makeFeatureDbFromUCSC	Making a FeatureDb object from annotations available at the UCSC Genome Browser
makePackageName	Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
makeTxDb	Making a TxDb object from user supplied annotations
makeTxDbFromBiomart	Make a TxDb object from annotations available on a BioMart database
makeTxDbFromEnsembl	Make a TxDb object from an Ensembl database
makeTxDbFromGFF	Make a TxDb object from annotations available as a GFF3 or GTF file
makeTxDbFromGRanges	Make a TxDb object from a GRanges object
makeTxDbFromUCSC	Make a TxDb object from annotations available at the UCSC Genome Browser
makeTxDbPackage	Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
makeTxDbPackageFromBiomart	Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
makeTxDbPackageFromUCSC	Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
supportedMiRBaseBuildValues	Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
supportedUCSCFeatureDbTables	Making a FeatureDb object from annotations available at the UCSC Genome Browser
supportedUCSCFeatureDbTracks	Making a FeatureDb object from annotations available at the UCSC Genome Browser
supportedUCSCtables	Make a TxDb object from annotations available at the UCSC Genome Browser
txdbmaker	Tools for making TxDb objects from genomic annotations
UCSCFeatureDbTableSchema	Making a FeatureDb object from annotations available at the UCSC Genome Browser