Package: spatialHeatmap
Type: Package
Title: spatialHeatmap: Visualizing Spatial Assays in Anatomical Images
        and Large-Scale Data Extensions
Version: 2.15.0
Date: 2024-11-23
Authors@R: c(
  person(given="Jianhai", family="Zhang", role=c("aut", "trl", "cre"), email="jzhan067@ucr.edu", comment=""),
  person(given="Le", family="Zhang", role="aut", email="lzhan140@ucr.edu", comment=""),
  person(given="Jordan", family="Hayes", role="aut", email="jhayes@ucr.edu", comment=""),
  person(given="Brendan", family="Gongol", role="aut", email="brendan.gongol@ucr.edu", comment=""),
  person(given="Alexander", family="Borowsky", role="aut", email="aboro002@ucr.edu", comment=""),
  person(given="Julia", family="Bailey-Serres", role="aut", email="julia.bailey@ucr.edu", comment=""),
  person(given="Thomas", family="Girke", role="aut", email="thomas.girke@ucr.edu", comment="")
  )
Description: The spatialHeatmap package offers the primary functionality for visualizing cell-, tissue- and organ-specific assay data in spatial anatomical images. Additionally, it provides extended functionalities for large-scale data mining routines and co-visualizing bulk and single-cell data. A description of the project is available here: https://spatialheatmap.org.
License: Artistic-2.0
Encoding: UTF-8
biocViews: Spatial, Visualization, Microarray, Sequencing,
        GeneExpression, DataRepresentation, Network, Clustering,
        GraphAndNetwork, CellBasedAssays, ATACSeq, DNASeq,
        TissueMicroarray, SingleCell, CellBiology, GeneTarget
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
Imports: data.table, dplyr, edgeR, genefilter, ggplot2, grImport, grid,
        gridExtra, igraph, methods, Matrix, rsvg, shiny, grDevices,
        graphics, ggplotify, parallel, reshape2, stats,
        SummarizedExperiment, SingleCellExperiment, shinydashboard,
        S4Vectors, spsComps (>= 0.3.3.0), tibble, utils, xml2
Suggests: AnnotationDbi, av, BiocParallel, BiocFileCache, BiocGenerics,
        BiocStyle, BiocSingular, Biobase, cachem, DESeq2, dendextend,
        DT, dynamicTreeCut, flashClust, gplots, ggdendro, HDF5Array,
        htmltools, htmlwidgets, kableExtra, knitr, limma, magick,
        memoise, ExpressionAtlas, GEOquery, org.Hs.eg.db, org.Mm.eg.db,
        org.At.tair.db, org.Dr.eg.db, org.Dm.eg.db, pROC, plotly,
        rmarkdown, rols, rappdirs, RUnit, Rtsne, rhdf5, scater,
        scuttle, scran, shinyWidgets, shinyjs, shinyBS, sortable,
        Seurat, sparkline, spsUtil, uwot, UpSetR, visNetwork, WGCNA,
        xlsx, yaml
BugReports: https://github.com/jianhaizhang/spatialHeatmap/issues
URL: https://spatialheatmap.org,
        https://github.com/jianhaizhang/spatialHeatmap
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/spatialHeatmap
git_branch: devel
git_last_commit: 8396505
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-04-27
NeedsCompilation: no
Packaged: 2025-04-27 21:42:15 UTC; biocbuild
Author: Jianhai Zhang [aut, trl, cre],
  Le Zhang [aut],
  Jordan Hayes [aut],
  Brendan Gongol [aut],
  Alexander Borowsky [aut],
  Julia Bailey-Serres [aut],
  Thomas Girke [aut]
Maintainer: Jianhai Zhang <jzhan067@ucr.edu>
Built: R 4.5.0; ; 2025-04-28 02:32:27 UTC; unix
