\name{scrapper News}
\title{scrapper News}
\encoding{UTF-8}

\section{Version 1.3.2}{\itemize{
\item Updated \code{correctMnn()} to the new algorithm used by the \pkg{mnncorrect} C++ library.
This aims to improve correction accuracy and reduce sensitivity to the choice of reference.
}}

\section{Version 1.3.1}{\itemize{
\item Bugfix to \code{runAllNeighborSteps()} to return an empty list when no step is requested.
}}

\section{Version 1.2.0}{\itemize{
\item Added the \code{aggregateAcrossGenes()} function, to compute an aggregate expression value for gene sets.

\item Added \code{compute.cohens.d=}, \code{compute.delta.mean=} and \code{compute.delta.detected=} options to \code{scoreMarkers()}.

\item Support \code{top=Inf} in \code{chooseHighlyVariableGenes()}.
Also added the \code{bound=} argument to set a hard upper/lower bound.

\item Bugfix for correct filtering with \code{block=} in the various \code{filter*QcMetrics()} functions when not all blocking levels are present.

\item Bugfix to \code{clusterKmeans()} to respect the user-supplied \code{seed=} in relevant initialization methods.

\item Added a \code{return.graph=} option to return the SNN graph from \code{runAllNeighborSteps()}.

\item Added a \code{testEnrichment()} function for quick and dirty gene set enrichment testing.

\item Modified \code{runPca()} so that it caps \code{number=} to the maximum number of available PCs.

\item Added an \code{analyze()} function that provides a one-click approach for analyzing single-cell data.

\item Added a \code{reportGroupMarkerStatistics()} function to combine all marker statistics for a single group into one data frame.

\item Switch \code{clusterGraph()} to use C++ wrappers around the igraph community detection algorithms via \pkg{Rigraphlib}.
This replaces the dependency on the igraph R package.

\item Added a \code{delayed=} option to avoid wrapping the matrix in a \code{DelayedArray} in \code{normalizeCounts()}.
}}
