clear_stan_model_cache | Clear Stan Model Cache |
counts_obj | counts_obj |
handle_missing_values | Handle missing values in a data frame |
no_significance_df | no_significance_df |
plot.sccomp_tbl | plot |
plot_1D_intervals | Plot 1D Intervals for Cell-group Effects |
plot_2D_intervals | Plot 2D Intervals for Mean-Variance Association |
plot_scatterplot | Plot Scatterplot of Cell-group Proportion |
print.sccomp_tbl | Print method for sccomp objects |
sccomp_boxplot | sccomp_boxplot |
sccomp_calculate_residuals | Calculate Residuals Between Observed and Predicted Proportions |
sccomp_estimate | Main Function for SCCOMP Estimate |
sccomp_predict | sccomp_predict |
sccomp_proportional_fold_change | Calculate Proportional Fold Change from sccomp Estimated Effects |
sccomp_remove_outliers | sccomp_remove_outliers main |
sccomp_remove_unwanted_effects | Remove unwanted effects from a sccomp_tbl object |
sccomp_remove_unwanted_variation | DEPRECATED: Remove Unwanted Variation from sccomp Estimates |
sccomp_replicate | sccomp_replicate |
sccomp_test | sccomp_test |
sccomp_theme | Create a multipanel theme compatible with ggplot2 4.0.0 S7 system |
sce_obj | sce_obj |
seurat_obj | seurat_obj |
simulate_data | simulate_data |