Package: sccomp
Title: Tests differences in cell-type proportion for single-cell data,
        robust to outliers
Version: 2.1.0
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
                  role = c("aut", "cre"))
                  )
Description: A robust and outlier-aware method for testing differences in cell-type proportion in single-cell data. This model can infer changes in tissue composition and heterogeneity, and can produce realistic data simulations based on any existing dataset. This model can also transfer knowledge from a large set of integrated datasets to increase accuracy further.
License: GPL-3
URL: https://github.com/MangiolaLaboratory/sccomp
BugReports: https://github.com/MangiolaLaboratory/sccomp/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.3.0)
Imports: instantiate (>= 0.2.3), stats, SingleCellExperiment, parallel,
        dplyr, tidyr, purrr, magrittr, rlang, tibble, boot, lifecycle,
        tidyselect, utils, ggplot2, ggrepel, patchwork, forcats, readr,
        scales, stringr, glue, crayon
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0), markdown,
        loo, prettydoc, tidyseurat, tidySingleCellExperiment,
        bayesplot, posterior
Additional_repositories: https://mc-stan.org/r-packages/
SystemRequirements: CmdStan
        (https://mc-stan.org/users/interfaces/cmdstan)
biocViews: Bayesian, Regression, DifferentialExpression, SingleCell,
        Metagenomics, FlowCytometry, Spatial
LazyData: true
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/sccomp
git_branch: devel
git_last_commit: c8b900d
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-04-27
NeedsCompilation: no
Packaged: 2025-04-27 21:28:33 UTC; biocbuild
Author: Stefano Mangiola [aut, cre]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Built: R 4.5.0; ; 2025-04-28 02:29:55 UTC; unix
