# Tests differences in cell-type proportion for single-cell data, robust to outliers

## Documentation for package ‘sccomp’ version 2.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

counts_obj | counts_obj
get_output_samples | Get Output Samples from a Stan Fit Object
multipanel_theme | multipanel_theme
no_significance_df | no_significance_df
plot.sccomp_tbl | plot
plot_1D_intervals | Plot 1D Intervals for Cell-group Effects
plot_2D_intervals | Plot 2D Intervals for Mean-Variance Association
plot_scatterplot | Plot Scatterplot of Cell-group Proportion
sccomp_boxplot | sccomp_boxplot
sccomp_calculate_residuals | Calculate Residuals Between Observed and Predicted Proportions
sccomp_estimate | Main Function for SCCOMP Estimate
sccomp_predict | sccomp_predict
sccomp_proportional_fold_change | Calculate Proportional Fold Change from sccomp Estimated Effects
sccomp_remove_outliers | sccomp_remove_outliers main
sccomp_remove_unwanted_variation | sccomp_remove_unwanted_variation
sccomp_replicate | sccomp_replicate
sccomp_test | sccomp_test
sce_obj | sce_obj
seurat_obj | seurat_obj
simulate_data | simulate_data