Differential Analysis of Single-cell Hi-C Data
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Documentation for package ‘scHiCcompare’ version 1.1.0
Help Pages
| ODC.bandnorm_chr20_1 | scHi-C data from oligodendrocyte (ODC) cell type - chromosome 20 at 1 MB resolution |
| plot_HiCmatrix_heatmap | Plot Hi-C Interaction Matrix Heatmap |
| plot_imputed_distance_diagnostic | Plot Imputed Distance Diagnostic |
| print.scHiCcompare | Print method for 'scHiCcompare' objects |
| pseudo_bulkHic | Generate Pseudo-bulk Hi-C Data |
| read_files | Read Files for scHi-C Dataset |
| scHiC.table_MG_chr22 | scHi-C table from microglia (MG) cell type - chromosome 22 at 1 MB resolution |
| scHiC.table_ODC_chr22 | scHi-C table from oligodendrocyte (ODC) cell type - chromosome 22 at 1 MB resolution |
| scHiCcompare | ScHiCcompare: Differential Analysis of Single-Cell Hi-C Data |
| scHiCcompare_impute | Random Forest Imputation with Pooling options for scHi-C Data |
| scHiC_bulk_compare | Compare Bulk Hi-C Data |
| scHiC_table | Create scHiC Interaction Frequency Table |