Reduce + Visualize GO

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Documentation for package ‘rrvgo’ version 1.21.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

calculateSimMatrix	calculateSimMatrix Calculate the score similarity matrix between terms
getGoSize	getGoSize Get GO term size (# of genes)
getGoTerm	getGoTerm Get the description of a GO term
getTermDisp	getTermDisp Calculate the term dispensability score, defined as the semantic similarity threshold a term was assigned to a cluster (namely, the similarity of a term to the cluster representative term).
getTermUniq	getTermUniq Calculate the term uniqueness score, defined as 1 minus the average semantic similarity of a term to all other terms.
gg_color_hue	gg_color_hue Emulate ggplot2 color palette.
heatmapPlot	heatmapPlot Plot similarity matrix as a heatmap
loadOrgdb	loadOrgdb Load an orgdb object
reduceSimMatrix	reduceSimMatrix Reduce a set of GO terms based on their semantic similarity and scores.
scatterPlot	scatterPlot Plot GO terms as scattered points.
shiny_rrvgo	shiny_rrvgo Launch an interactive web interface.
treemapPlot	treemapPlot Plot GO terms as a treemap.
wordcloudPlot	wordlcoudPlot Plot GO reduced terms as a wordcloud.