# Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful

## Documentation for package ‘rawDiag’ version 1.5.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

.calculatioMasterScan | Calculate Master Scan Number
.cycleTime | Calculate MS Cycle Time
.fillNAgaps | Fill NA values with last previous value
buildRawDiagShinyApp | Build the rawDiag shiny application
checkRawrr | Checks Bioconductor installation instructions
is.rawDiag | Is an Object an rawDiag Object?
PlotChargeState | Charge State Overview Plot
plotChargeState | Charge State Overview Plot
PlotCycleLoad | Cycle Load Plot
plotCycleLoad | Cycle Load Plot
PlotCycleTime | Plot Cycle Time
plotCycleTime | Plot Cycle Time
PlotInjectionTime | Plot Injection Time
plotInjectionTime | Plot Injection Time
PlotLockMassCorrection | Lock Mass Correction Plot
plotLockMassCorrection | Lock Mass Correction Plot
PlotMassDistribution | Mass Distribution Plot
plotMassDistribution | Mass Distribution Plot
PlotMzDistribution | mZ Distribution Plot of Ms2 Scans
plotMzDistribution | mZ Distribution Plot of Ms2 Scans
PlotPrecursorHeatmap | Precursor Mass versus StartTime MS2 based hexagons
plotPrecursorHeatmap | Precursor Mass versus StartTime MS2 based hexagons
PlotScanTime | Scan Event Plot
plotScanTime | Scan Event Plot
PlotTicBasepeak | Total Ion Count and Base Peak Plot
plotTicBasepeak | Total Ion Count and Base Peak Plot
rawDiag | Reads selected raw file trailer information for rawDiag plot functions
rawDiagServer | rawDiag shiny module
rawDiagUI | rawDiag shiny module UI
readRaw | Reads selected raw file trailer information for rawDiag plot functions