# Visual and interactive gene expression analysis

## Documentation for package ‘phantasus’ version 1.29.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

es | Example dataset
fgseaExample | Example pathway data.frame for fgsea tool
generatePreloadedSession | Generate files for preloaded session from a session link.
getES | Load ExpressionSet by GEO identifier
getGDS | Load ExpressionSet from GEO Datasets
getGSE | Load ExpressionSet from GEO Series
getPhantasusConf | Read Phantasus Config
read.gct | Reads ExpressionSet from a GCT file. Function is deprecated, please use phantasusLite:::readGct() instead
reparseCachedESs | Reparse cached expression sets from GEO.
servePhantasus | Serve phantasus.
setupPhantasus | Setup phantasus. Read user config file ( or create default one) and fill 'cache_root' using sources in 'file'.
write.gct | Saves ExpressionSet to a GCT file (version 1.3). Function is deprecated, please use phantasusLite:::writeGct() instead