Statistical analysis of peptide microarrays

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Documentation for package ‘pepStat’ version 1.43.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

baselineCorrect.pSet	Substract baseline intensities
baseline_correct	Substract baseline intensities
clade	peptideSet methods
clade-method	peptideSet methods
clade-methods	peptideSet methods
create_db	Create a peptide collection
end-method	peptideSet methods
featureID	peptideSet methods
featureID-method	peptideSet methods
makeCalls	Make antibody binding positivity calls
makePeptideSet	peptideSet constructor
NormalizeArray	Normalize tiling array data using sequence information
normalizeArray	Normalize tiling array data using sequence information
peptide	peptideSet methods
peptide-method	peptideSet methods
peptide<-	peptideSet methods
peptide<--method	peptideSet methods
peptideSet	peptideSet class
peptideSet-class	peptideSet class
peptideSet-methods	peptideSet methods
pepZscore	peptideSet methods
pepZscore-method	peptideSet methods
pepZscore<-	peptideSet methods
pepZscore<--method	peptideSet methods
plotArrayImage	Plot microarray images
plotArrayResiduals	Plot microarray images
position	peptideSet methods
position-method	peptideSet methods
ranges-method	peptideSet methods
ranges<--method	peptideSet methods
restab	Result table
shinyPepStat	Launch the pepStat Shiny Application
show-method	peptideSet methods
slidingMean	Data smoothing for peptide microarray.
start-method	peptideSet methods
subset-method	peptideSet methods
summarizePeptides	Add information to a peptideSet and summarize peptides
summary-method	peptideSet methods
values-method	peptideSet methods
width-method	peptideSet methods
[-method	peptideSet methods