Render molecular pathways

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Documentation for package ‘pathRender’ version 1.77.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

coloredGraph-class	Class "coloredGraph"
colorNodes	attach node coloring information to a graphNEL instance
colorNodes-method	attach node coloring information to a graphNEL instance
graphcMAP	obtain a graph object corresponding to a cMAP pathway
plot-method	Class "coloredGraph"
plot-method	Class "pwayGraph" - extension to graphNEL for pathway rendering
plotExGraph	plot a gene network, coloring nodes according to relative expression values
pwayGraph-class	Class "pwayGraph" - extension to graphNEL for pathway rendering
pwayRendAttrs	Class "coloredGraph"
reduceES	collapse the assay values in an ExpressionSet to a set of specified genes, using a statistic when multiple probes map to a given gene
rendercMAPPathway	Render pathways from cMAP