Motif Analysis In Gene Regulatory Networks

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Documentation for package ‘magrene’ version 1.11.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

calculate_Z	Calculate Z-score for motif frequencies
find_bifan	Find bifan motifs
find_delta	Find delta motifs
find_lambda	Find lambda motifs
find_ppi_v	Find V motifs in protein-protein interactions
find_v	Find V motifs
generate_nulls	Generate null distributions of motif counts for each motif type
gma_grn	Sample soybean GRN
gma_paralogs	Soybean (Glycine max) duplicated genes
gma_ppi	Sample soybean PPI network
nulls	Null distribution of motif frequencies for vignette data set
sd_similarity	Calculate Sorensen-Dice similarity between paralogous gene pairs