Identification of SNP Interactions

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Documentation for package ‘logicFS’ version 2.29.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

cl.logicfs	Example Data of logicFS
data.logicfs	Example Data of logicFS
getMatEval	Evaluate Prime Implicants
logic.bagging	Bagged Logic Regression
logic.bagging.default	Bagged Logic Regression
logic.bagging.formula	Bagged Logic Regression
logic.oob	Prime Implicants
logic.pimp	Prime Implicants
logicFS	Feature Selection with Logic Regression
logicFS.default	Feature Selection with Logic Regression
logicFS.formula	Feature Selection with Logic Regression
logicFS.logicBagg	Feature Selection with Logic Regression
make.snp.dummy	SNPs to Dummy Variables
mlogreg	Multinomial Logic Regression
mlogreg.default	Multinomial Logic Regression
mlogreg.formula	Multinomial Logic Regression
plot.logicBagg	Variable Importance Plot
plot.logicFS	Variable Importance Plot
plot.predict.survivalFS	Survival and Cumulative Hazard Function Plot
predict.logicBagg	Predict Method for logicBagg objects
predict.mlogreg	Predict Method for mlogreg Objects
print.logicBagg	Bagged Logic Regression
print.logicFS	Print a logicFS object
print.mlogreg	Multinomial Logic Regression
print.predict.survivalFS	Survival and Cumulative Hazard Function Plot
survivalFS	Logic Feature Selection for Survival Data
survivalFS.default	Logic Feature Selection for Survival Data
survivalFS.formula	Logic Feature Selection for Survival Data
survivalFS.logicBagg	Logic Feature Selection for Survival Data
vim.approxPval	Approximate P-Value Based Importance Measure
vim.chisq	ChiSquare Based Importance
vim.ebam	EBAM Based Importance
vim.individual	VIM for Inputs
vim.input	VIM for Inputs
vim.logicFS	Importance Measures
vim.norm	Standardized and Sign-Permutation Based Importance Measure
vim.permInput	Permutation Based Importance Measures
vim.permSet	Permutation Based Importance Measures
vim.permSNP	Permutation Based Importance Measures
vim.set	VIM for SNPs and Sets of Variables
vim.signperm	Standardized and Sign-Permutation Based Importance Measure
vim.snp	VIM for SNPs and Sets of Variables