Automatic scoring and classification of cell-based assay images


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Documentation for package ‘islify’ version 1.1.0

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islify-package Automatic scoring and classification of cell-based assay images
getIntensityCutoff Identification of an intensity cutoff for a whole experiment
getQuantileIntensities Get information about the quantiles for the intensity values for all colors in an image
getSizeCutoff Identification of a suitable size cutoff for cells
islify Generation of islands and island derived statistics
negImage A few CASPR2-negative cells
posImage A few CASPR2-positive cells
saveImage Saving individually coloured png images from raw image input
zprime Compute the Z'-factor quality score