Package: immApex
Title: Tools for Adaptive Immune Receptor Sequence-Based Machine and
        Deep Learning
Version: 1.4.0
Authors@R: c(
    person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "ncborch@gmail.com"))
Description: A set of tools to for machine and deep learning in R from amino acid and nucleotide sequences focusing on adaptive immune receptors. The package includes pre-processing of sequences, unifying gene nomenclature usage, encoding sequences, and combining models. This package will serve as the basis of future immune receptor sequence functions/packages/models compatible with the scRepertoire ecosystem.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.2
biocViews: Software, ImmunoOncology, SingleCell, Classification,
        Annotation, Sequencing, MotifAnnotation
Depends: R (>= 4.3.0)
Imports: hash, httr, Matrix, matrixStats, methods, Rcpp, rvest,
        SingleCellExperiment, stats, stringr, utils
Suggests: BiocStyle, dplyr, ggraph, ggplot2, igraph, knitr, markdown,
        Peptides, randomForest, rmarkdown, scRepertoire, spelling,
        testthat, tidygraph, viridis
SystemRequirements: Python (via basilisk)
LinkingTo: Rcpp
VignetteBuilder: knitr
Language: en-US
URL: https://github.com/BorchLab/immApex/
BugReports: https://github.com/BorchLab/immApex/issues
git_url: https://git.bioconductor.org/packages/immApex
git_branch: RELEASE_3_22
git_last_commit: b2a3afb
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: yes
Packaged: 2025-10-30 03:08:32 UTC; biocbuild
Author: Nick Borcherding [aut, cre]
Maintainer: Nick Borcherding <ncborch@gmail.com>
Built: R 4.5.1; aarch64-apple-darwin20; 2025-10-30 09:28:13 UTC; unix
