augment_germline_db | Add novel gene alleles to a germline db |
augment_germline_db_D | Add novel gene alleles to a germline db |
augment_germline_db_J | Add novel gene alleles to a germline db |
augment_germline_db_V | Add novel gene alleles to a germline db |
auxiliary-data-utils | Manipulation of IgBLAST auxiliary data |
auxiliary_data_utils | Manipulation of IgBLAST auxiliary data |
bcr_browser | Display annotated BCR sequences in the browser |
BLAST_USAGE_REPORT | Turn "Usage Reporting" on or off |
download_paired_OAS_units | Download and manipulate OAS data |
extract_metadata_from_OAS_units | Download and manipulate OAS data |
extract_sequences_from_paired_OAS_df | Download and manipulate OAS data |
extract_sequences_from_paired_OAS_units | Download and manipulate OAS data |
get_igblast_auxiliary_data | Manipulation of IgBLAST auxiliary data |
get_igblast_root | Control IgBLAST installation to use |
has_igblast | Check IgBLAST used by igblastr |
igblastn | BLAST for Ig and TCR sequences |
igblastn_help | BLAST for Ig and TCR sequences |
igblastn_version | Check IgBLAST used by igblastr |
igblastr_usage_report | Turn "Usage Reporting" on or off |
igblast_build | Check IgBLAST used by igblastr |
igblast_info | Check IgBLAST used by igblastr |
IGBLAST_ROOT | Use an external IgBLAST installation |
IMGT_is_up | Install a germline db from IMGT |
install_igblast | Install IgBLAST |
install_IMGT_germline_db | Install a germline db from IMGT |
list_c_region_dbs | List cached C-region dbs and select one to use with igblastn() |
list_germline_dbs | List cached germline dbs and select one to use with igblastn() |
list_igblast_organisms | Check IgBLAST used by igblastr |
list_IMGT_organisms | Install a germline db from IMGT |
list_IMGT_releases | Install a germline db from IMGT |
list_outfmt7_specifiers | Handle igblastn output format 7 |
list_paired_OAS_studies | Download and manipulate OAS data |
list_paired_OAS_units | Download and manipulate OAS data |
load_c_region_db | List cached C-region dbs and select one to use with igblastn() |
load_germline_db | List cached germline dbs and select one to use with igblastn() |
load_igblast_auxiliary_data | Manipulation of IgBLAST auxiliary data |
makeblastdb_version | Check IgBLAST used by igblastr |
OAS-utils | Download and manipulate OAS data |
OAS_utils | Download and manipulate OAS data |
outfmt7-utils | Handle igblastn output format 7 |
parse_outfmt7 | Handle igblastn output format 7 |
print.alignment_summary | Handle igblastn output format 7 |
print.c_region_dbs_df | List cached C-region dbs and select one to use with igblastn() |
print.fmt7footer | Handle igblastn output format 7 |
print.fmt7record | Handle igblastn output format 7 |
print.germline_dbs_df | List cached germline dbs and select one to use with igblastn() |
print.hit_table | Handle igblastn output format 7 |
print.igblastn_raw_output | BLAST for Ig and TCR sequences |
print.igblast_info | Check IgBLAST used by igblastr |
print.outfmt7_specifiers | Handle igblastn output format 7 |
print.query_details | Handle igblastn output format 7 |
print.subregion_sequence_details | Handle igblastn output format 7 |
print.VDJ_junction_details | Handle igblastn output format 7 |
print.VDJ_rearrangement_summary | Handle igblastn output format 7 |
qseqid | Handle igblastn output format 7 |
qseqid.fmt7record | Handle igblastn output format 7 |
qseqid.query_details | Handle igblastn output format 7 |
read_OAS_csv | Download and manipulate OAS data |
read_OAS_csv_metadata | Download and manipulate OAS data |
set_igblast_root | Control IgBLAST installation to use |
summary.query_details | Handle igblastn output format 7 |
Usage_report | Turn "Usage Reporting" on or off |
usage_report | Turn "Usage Reporting" on or off |
Usage_reporting | Turn "Usage Reporting" on or off |
usage_reporting | Turn "Usage Reporting" on or off |
use_c_region_db | List cached C-region dbs and select one to use with igblastn() |
use_germline_db | List cached germline dbs and select one to use with igblastn() |