Integrative clustering of multi-type genomic data

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Documentation for package ‘iClusterPlus’ version 1.45.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Code demos. Use demo() to run them.
• Package NEWS.

Help Pages

breast.chr17	Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17
CNregions	A function to remove redundant copy number regions
compute.pod	A function to compute the proportion of deviation from perfect block diagonal matrix
coord	genomic coordinates
gbm.exp	GBM data
gbm.mut	GBM data
gbm.seg	GBM data
getBIC	Utility functions for iClusterPlus package
getClusters	Utility functions for iClusterPlus package
getDevR	Utility functions for iClusterPlus package
glp	good lattice points using the uniform design
iCluster	Integrative clustering of multiple genomic data types
iCluster2	Integrative clustering of multiple genomic data types
iClusterBayes	Integrative clustering of multiple genomic data types
iClusterPlus	Integrative clustering of multiple genomic data types
iManual	Utility functions for iClusterPlus package
plotHeatmap	A function to generate heatmap panels sorted by integrated cluster assignment.
plotHMBayes	A function to generate heatmap panels sorted by integrated cluster assignment.
plotiCluster	A function to generate cluster separability matrix plot.
plotRI	A function to generate reproducibility index plot.
simuResult	The results for the analysis of the simulated data.
tune.iCluster2	Integrative clustering of multiple genomic data types
tune.iClusterBayes	Integrative clustering of multiple genomic data
tune.iClusterPlus	Integrative clustering of multiple genomic data
variation.hg18.v10.nov.2010	Human genome variants of the NCBI 36 (hg18) assembly