From functional enrichment results to biological networks

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Documentation for package ‘enrichViewNet’ version 1.7.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

enrichViewNet-package	From functional enrichment results to biological networks
createEnrichMap	Using functional enrichment results in gprofiler2 format to create an enrichment map
createEnrichMapMultiBasic	Using functional enrichment results in gprofiler2 format to create an enrichment map with multiple groups from different enrichment analyses
createEnrichMapMultiComplex	Using functional enrichment results in gprofiler2 format to create an enrichment map with multiple groups from same or different enrichment analyses
createNetwork	Using functional enrichment results from gprofiler2 to create a Cytoscape network
demoGOST	The result of a functional enrichment analysis done with 'gprofiler2' (<https://cran.r-project.org/web/packages/gprofiler2/vignettes/gprofiler2.html>).
enrichViewNet	From functional enrichment results to biological networks
parentalNapaVsDMSODEG	The result of a differential expression analysis done between napabucasin treated and DMSO control parental MiaPaCa2 cells. The cells were treated for 2 hours with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.
parentalNapaVsDMSOEnrichment	The result of an enrichment analysis has been done using the significantly differentially expressed genes between napabucasin treated and DMSO control parental MiaPaCa2 cells. The cells were treated for 2 hour with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.
rosaNapaVsDMSODEG	The result of a differential expression analysis done between napabucasin treated and DMSO control MiaPaCa2 cells stably expressing the Rosa26 control vector. The cells were treated for 2 hours with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.
rosaNapaVsDMSOEnrichment	The result of an enrichment analysis that has been done using the significantly differentially expressed genes between napabucasin treated and DMSO control MiaPaCa2 cells stably expressing the Rosa26 control vector. The cells were treated for 2 hour with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.