crupR-package |
crupR: Condition-specific Regulatory Units Prediction |
crupR |
crupR: Condition-specific Regulatory Units Prediction |
getDynamics |
Clusters the active enhancer into condition-specific groups |
getEnhancers |
Predicts the occurence of enhancers using the normalized HMs counts. |
getSE |
Find enhancer peaks and super enhancers |
getTargets |
Find the target genes of the regulatory, condition-specific clusters |
normalize |
Normalization of ChIP-seq counts by input |
plotSummary |
plots boxplots of the max. enhancer prediction values of the enhancers in the condition-specific clusters |
saveFiles |
Function to save the different output objects of each step |