Count ratio uncertainty modeling base linear regression

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Documentation for package ‘crumblr’ version 1.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

crumblr-package	crumblr
buildClusterTree	Perform hierarchical clustering on reducedDim
clr	Centered log ratio transform
clrInv	Inverse of Centered log ratio transform
crumblr	Count ratio uncertainty modeling based linear regression
crumblr-method	Count ratio uncertainty modeling based linear regression
df_cellCounts	Cell counts following interferon treatment
diffTree	Compare difference in estimates between two trees
dmn_mle	MLE for Dirichlet Multinomial
hcl	Cell counts following interferon treatment
IFNCellCounts	Cell counts following interferon treatment
info	Cell counts following interferon treatment
logFrac	Log fractions and precision weights
meanSdPlot	Plot row standard deviations versus rank of row means
plotForest	Forest plot
plotForest-method	Forest plot
plotScatterDensity	Scatter plot with 2D density using viridis colors
plotTreeTest	Plot tree with results from multivariate testing
plotTreeTestBeta	Plot tree coefficients from multivariate testing
standardize	Standardize observations using precision weights
standardize-method	Standardize observations using precision weights
treeTest	Perform multivariate testing along a hierarchy