UMI4Cats-package	UMI4Cats
.getCache	dot-getCache
.getSummaryBam	dot-getSummaryBam
.singleAlignmentUMI4C	dot-singleAlignmentUMI4C
.singleCounterUMI4C	dot-singleCounterUMI4C
.singlePrepUMI4C	dot-singlePrepUMI4C
.singleSplitUMI4C	dot-singleSplitUMI4C
.smoothMonotone	dot-smoothMonotone
.UMI4C	UMI4C
addGrouping	addGrouping
addStepping	addStepping
alignmentUMI4C	alignmentUMI4C
bait	UMI4C-methods
bait,UMI4C-method	UMI4C-methods
calculateAdaptativeTrend	calculateAdaptativeTrend
calculateDomainogram	calculateDomainogram
callInteractions	callInteractions
combineUMI4C	combineUMI4C
contactsUMI4C	contactsUMI4C
counterUMI4C	counterUMI4C
createGeneAnnotation	createGeneAnnotation
createStatsTable	createStatsTable
darken	darken
dds2UMI4C	dds2UMI4C
demultiplexFastq	demultiplexFastq
dgram	UMI4C-methods
dgram,UMI4C-method	UMI4C-methods
dgram<-	UMI4C-methods
dgram<-,UMI4C-method	UMI4C-methods
differentialNbinomWaldTestUMI4C	differentialNbinomWaldTestUMI4C
digestGenome	digestGenome
downloadUMI4CexampleData	downloadUMI4CexampleData
ex_ciita_umi4c	ex_ciita_umi4c
fisherUMI4C	fisherUMI4C
formatPlotsUMI4C	formatPlotsUMI4C
geoMeanCoordinates	geoMeanCoordinates
getColors	getColors
getFactors	getFactors
getNormalizationMatrix	getNormalizationMatrix
getSignInteractions	getSignInteractions
getViewpointCoordinates	getViewpointCoordinates
groupSamplesUMI4C	groupSamplesUMI4C
groupsUMI4C	UMI4C-methods
groupsUMI4C,UMI4C-method	UMI4C-methods
groupsUMI4C<-	UMI4C-methods
groupsUMI4C<-,UMI4C-method	UMI4C-methods
makeUMI4C	UMI4C
makeWindowFragments	makeWindowFragments
nbinomWaldTestUMI4C	nbinomWaldTestUMI4C
plotDifferential	plotDifferential
plotDomainogram	plotDomainogram
plotGenes	plotGenes
plotInteractions	plotInteractions
plotInteractionsUMI4C	plotInteractionsUMI4C
plotTrend	plotTrend
plotUMI4C	plotUMI4C
prepUMI4C	prepUMI4C
resultsUMI4C	UMI4C-methods
resultsUMI4C,UMI4C-method	UMI4C-methods
smoothMonotoneUMI4C	smoothMonotoneUMI4C
splitUMI4C	splitUMI4C
statsUMI4C	statsUMI4C
theme	theme
themeXblank	themeXblank
themeXYblank	themeXYblank
themeYblank	themeYblank
trend	UMI4C-methods
trend,UMI4C-method	UMI4C-methods
UMI4C	UMI4C
UMI4C-class	UMI4C
UMI4C-methods	UMI4C-methods
UMI4C2dds	UMI4C2dds
UMI4Cats	UMI4Cats
vstUMI4C	vstUMI4C
waldUMI4C	waldUMI4C
zscoreUMI4C	zscoreUMI4C
