Package: TFEA.ChIP
Version: 1.29.3
Title: TFEA.ChIP, a Tool Kit for Transcription Factor Enrichment
Authors@R: c(person(given = "Laura", family = "Puente-Santamaria", email = "laura.puentes@estudiante.uam.es", role = c("aut")),
	     person(given = "Yosra", family = "Berrouayel", email = "yosraberrouayel@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-0768-5933")),
	     person(given = "Luis", family = "del Peso", email = "lpeso@iib.uam.es", role = c("aut"), comment = c(ORCID = "0000-0003-4014-5688")))
Imports: GenomicRanges, IRanges, biomaRt, GenomicFeatures,
        GenomicRanges, grDevices, dplyr, stats, utils, R.utils,
        methods, org.Hs.eg.db, org.Mm.eg.db, rlang, ExperimentHub
Suggests: knitr, rmarkdown, BiocStyle, S4Vectors, Seqinfo, meta,
        plotly, scales, tidyr, purrr, tibble, ggplot2, DESeq2, edgeR,
        limma, babelgene, BiocGenerics, ggrepel, rcompanion,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationDbi, RColorBrewer,
        RUnit, testthat (>= 3.0.0)
Description: Package to analyze transcription factor enrichment in a gene set using data from ChIP-Seq experiments.
Depends: R (>= 4.2.0)
License: Artistic-2.0
Encoding: UTF-8
RoxygenNote: 7.3.2
LazyData: true
LazyDataCompression: xz
VignetteBuilder: knitr, BiocStyle
biocViews: Transcription, GeneRegulation, GeneSetEnrichment,
        Transcriptomics, Sequencing, ChIPSeq, RNASeq, ImmunoOncology,
        GeneExpression, ChipOnChip
BuildVignettes: true
URL: https://github.com/yberda/TFEA.ChIP
BugReports: https://github.com/yberda/TFEA.ChIP/issues
git_url: https://git.bioconductor.org/packages/TFEA.ChIP
git_branch: devel
git_last_commit: 9e8f094
git_last_commit_date: 2025-09-08
Repository: Bioconductor 3.22
Date/Publication: 2025-09-08
NeedsCompilation: no
Packaged: 2025-09-08 21:51:11 UTC; biocbuild
Author: Laura Puente-Santamaria [aut],
  Yosra Berrouayel [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0768-5933>),
  Luis del Peso [aut] (ORCID: <https://orcid.org/0000-0003-4014-5688>)
Maintainer: Yosra Berrouayel <yosraberrouayel@gmail.com>
Built: R 4.5.1; ; 2025-09-09 02:56:25 UTC; unix
