A simple S4 class for storing basic information about a collection of genomic sequences

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Documentation for package ‘Seqinfo’ version 0.99.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as.data.frame-method	Seqinfo objects
as.data.frame.Seqinfo	Seqinfo objects
bsgenomeName	GenomeDescription objects
bsgenomeName-method	GenomeDescription objects
checkCompatibleSeqinfo	Seqinfo objects
class:GenomeDescription	GenomeDescription objects
class:Seqinfo	Seqinfo objects
coerce-method	Seqinfo objects
commonName	GenomeDescription objects
commonName-method	GenomeDescription objects
genome	Accessing/modifying sequence information
genome-method	Seqinfo objects
genome-method	Accessing/modifying sequence information
genome<-	Accessing/modifying sequence information
genome<--method	Seqinfo objects
genome<--method	Accessing/modifying sequence information
GenomeDescription	GenomeDescription objects
GenomeDescription-class	GenomeDescription objects
intersect-method	Seqinfo objects
isCircular	Accessing/modifying sequence information
isCircular-method	Seqinfo objects
isCircular-method	Accessing/modifying sequence information
isCircular<-	Accessing/modifying sequence information
isCircular<--method	Seqinfo objects
isCircular<--method	Accessing/modifying sequence information
length-method	Seqinfo objects
merge-method	Seqinfo objects
merge.Seqinfo	Seqinfo objects
names-method	Seqinfo objects
names<--method	Seqinfo objects
orderSeqlevels	Assign sequence IDs to sequence names
organism	GenomeDescription objects
organism-method	GenomeDescription objects
provider	GenomeDescription objects
provider-method	GenomeDescription objects
providerVersion	GenomeDescription objects
providerVersion-method	GenomeDescription objects
rankSeqlevels	Assign sequence IDs to sequence names
releaseDate	GenomeDescription objects
releaseDate-method	GenomeDescription objects
restoreSeqlevels	Accessing/modifying sequence information
Seqinfo	Seqinfo objects
seqinfo	Accessing/modifying sequence information
Seqinfo-class	Seqinfo objects
seqinfo-method	GenomeDescription objects
seqinfo<-	Accessing/modifying sequence information
seqlengths	Accessing/modifying sequence information
seqlengths-method	Seqinfo objects
seqlengths-method	Accessing/modifying sequence information
seqlengths<-	Accessing/modifying sequence information
seqlengths<--method	Seqinfo objects
seqlengths<--method	Accessing/modifying sequence information
seqlevels	Accessing/modifying sequence information
seqlevels-method	Seqinfo objects
seqlevels-method	Accessing/modifying sequence information
seqlevels0	Accessing/modifying sequence information
seqlevels<-	Accessing/modifying sequence information
seqlevels<--method	Seqinfo objects
seqlevels<--method	Accessing/modifying sequence information
seqlevelsInUse	Get the sequence levels in use
seqlevelsInUse-method	Get the sequence levels in use
seqnames	Accessing/modifying sequence information
seqnames-method	GenomeDescription objects
seqnames-method	Seqinfo objects
seqnames<-	Accessing/modifying sequence information
seqnames<--method	Seqinfo objects
show-method	GenomeDescription objects
show-method	Seqinfo objects
sortSeqlevels	Sort the sequence levels of an object
sortSeqlevels-method	Sort the sequence levels of an object
species	GenomeDescription objects
species-method	GenomeDescription objects
summary-method	Seqinfo objects
summary.Seqinfo	Seqinfo objects
update-method	Seqinfo objects
update.Seqinfo	Seqinfo objects
updateObject-method	Seqinfo objects
[-method	Seqinfo objects