Spatial Analysis of Network Associations

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Documentation for package ‘SANTA’ version 2.45.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BinGraph	Compute a distance bin matrix from a distance matrix
Compactness	Measure the strength of association using compactness scores
CreateGrid	Generate a grid-like network
DistGraph	Compute the vertex pair distance matrix for a graph
edgelist.humannet	Pre-processed dataset for the SANTA vignette
edgelist.intact	Pre-processed dataset for the SANTA vignette
g.bandyopadhyay.treated	Pre-processed dataset for the SANTA vignette
g.bandyopadhyay.untreated	Pre-processed dataset for the SANTA vignette
g.costanzo.cor	Pre-processed dataset for the SANTA vignette
g.costanzo.raw	Pre-processed dataset for the SANTA vignette
g.srivas.high	Pre-processed dataset for the SANTA vignette
g.srivas.untreated	Pre-processed dataset for the SANTA vignette
go.entrez	Pre-processed dataset for the SANTA vignette
GraphDiffusion	Compute diffusion kernel-based distance matrix
GraphMFPT	Compute mean first-passage time-based distance matrix
Knet	Measure the strength of association between a phenotype and a network by computing the strength of hit clustering on the network
Knode	Rank vertices by their strength of association with high-weight vertices
plot.Knet	Plot the results of the 'Knet' function
rnai.cheung	Pre-processed dataset for the SANTA vignette
SpreadHits	Spread hits across a network in clusters