# RESOLVE: An R package for the efficient analysis of mutational signatures from cancer genomes

## Documentation for package ‘RESOLVE’ version 1.11.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

associationAlterations | associationAlterations
associationPrognosis | associationPrognosis
associationSignatures | associationSignatures
association_mutations | List providing mutations as binary variables and signatures assignments for 656 breast cancer patients
association_survival | List providing clinical data and signatures assignments for 359 pancreatic cancer patients
background | Germline replication error
background2 | COSMIC replication error
cn_example_reduced | A reduced version of the copy number data for 5 TCGA samples in the format compatible with the import function
getCNCounts | getCNCounts
getIDCounts | getIDCounts
getMNVCounts | getMNVCounts
getSBSCounts | getSBSCounts
groupsCNPlot | groupsCNPlot
groupsCXPlot | groupsCXPlot
groupsIDPlot | groupsIDPlot
groupsMNVPlot | groupsMNVPlot
groupsSBSPlot | groupsSBSPlot
id_example_reduced | A reduced version of the indel data for 3 samples in the format compatible with the import function
patients | Point mutations for 560 breast tumors
patientsCNPlot | patientsCNPlot
patientsCXPlot | patientsCXPlot
patientsIDPlot | patientsIDPlot
patientsMNVPlot | patientsMNVPlot
patientsSBSPlot | patientsSBSPlot
plot_data_examples | List data structure to run examples
sbs_assignments | SBS assignments for 560 breast tumors
signaturesAssignment | signaturesAssignment
signaturesClustering | signaturesClustering
signaturesCNPlot | signaturesCNPlot
signaturesCV | signaturesCV
signaturesCXPlot | signaturesCXPlot
signaturesDecomposition | signaturesDecomposition
signaturesIDPlot | signaturesIDPlot
signaturesMNVPlot | signaturesMNVPlot
signaturesSBSPlot | signaturesSBSPlot
signaturesSignificance | signaturesSignificance
ssm560_reduced | A reduced version of the point mutations for 560 breast tumors in the format compatible with the import function