S4 classes for QTL summary statistics and metadata
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Documentation for package ‘QTLExperiment’ version 2.1.1
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| .mashData_2_qtle | Coercing mash data objects into QTLe objects |
| .mashFit_2_qtle | Coercing mash data objects into QTLe objects |
| .recover_qtle_ids | Recover QTLExperiment IDs |
| betas | Named assay getters and setters |
| betas-method | Named assay getters and setters |
| betas<- | Named assay getters and setters |
| betas<--method | Named assay getters and setters |
| cbind-method | Combining QTLExperiment objects |
| coerce-method | An S4 class to represent QTL summary statistics. |
| colData | Modify and view the colData of a QTLExperiment |
| colData-method | Modify and view the colData of a QTLExperiment |
| colData<- | Modify and view the colData of a QTLExperiment |
| colData<--method | Modify and view the colData of a QTLExperiment |
| errors | Named assay getters and setters |
| errors-method | Named assay getters and setters |
| errors<- | Named assay getters and setters |
| errors<--method | Named assay getters and setters |
| feature_id | Named rowData getters and setters |
| feature_id-method | Named rowData getters and setters |
| feature_id<- | Named rowData getters and setters |
| feature_id<--method | Named rowData getters and setters |
| lfsrs | Named assay getters and setters |
| lfsrs-method | Named assay getters and setters |
| lfsrs<- | Named assay getters and setters |
| lfsrs<--method | Named assay getters and setters |
| mainExpName | Return the name of a QTLExperiment object. |
| mainExpName-method | Return the name of a QTLExperiment object. |
| mainExpName<- | Return the name of a QTLExperiment object. |
| mainExpName<--method | Return the name of a QTLExperiment object. |
| mash2qtle | Coercing mash data objects into QTLe objects |
| mockMASHR | Mock data for the QTLExperiment object |
| mockMASHR_FIT | Mock data for the QTLExperiment object |
| mockQTLE | Mock data for the QTLExperiment object |
| mockSummaryStats | Mock data for the QTLExperiment object |
| objectVersion | Return the version of a QTLExperiment object |
| objectVersion-method | Return the version of a QTLExperiment object |
| pvalues | Named assay getters and setters |
| pvalues-method | Named assay getters and setters |
| pvalues<- | Named assay getters and setters |
| pvalues<--method | Named assay getters and setters |
| qtle-assays | Named assay getters and setters |
| QTLe-coerce | Coercing mash data objects into QTLe objects |
| qtle-colData | Modify and view the colData of a QTLExperiment |
| QTLe-combine | Combining QTLExperiment objects |
| QTLe-name | Return the name of a QTLExperiment object. |
| QTLe-recover | Recover QTLExperiment IDs |
| qtle-rowData | rowData method for QTLExperiment |
| qtle-row_ids | Named rowData getters and setters |
| qtle-state-id | Modify and view state ID |
| QTLe-version | Return the version of a QTLExperiment object |
| QTLExperiment | An S4 class to represent QTL summary statistics. |
| QTLExperiment-class | An S4 class to represent QTL summary statistics. |
| rbind-method | Combining QTLExperiment objects |
| rowData | rowData method for QTLExperiment |
| rowData-method | rowData method for QTLExperiment |
| rowData<- | rowData method for QTLExperiment |
| rowData<--method | rowData method for QTLExperiment |
| state_id | Modify and view state ID |
| state_id-method | Modify and view state ID |
| state_id<- | Modify and view state ID |
| state_id<--method | Modify and view state ID |
| subset | Subsetting and replacing data in QTLExperiment objects |
| subset-method | Subsetting and replacing data in QTLExperiment objects |
| sumstats2qtle | Coerce QTL summary statistics into a QTLExperiment object |
| updateObject | Update a QTLExperiment object |
| updateObject-method | Update a QTLExperiment object |
| variant_id | Named rowData getters and setters |
| variant_id-method | Named rowData getters and setters |
| variant_id<- | Named rowData getters and setters |
| variant_id<--method | Named rowData getters and setters |
| [-method | Subsetting and replacing data in QTLExperiment objects |
| [<--method | Subsetting and replacing data in QTLExperiment objects |