| PICBannotate |
Annotate GRanges according to a piRNA library |
| PICBbuild |
Build piRNA seeds/cores/clusters from alignments |
| PICBexporttoexcel |
Export cluster object into an Excel file |
| PICBgetchromosomes |
Get SeqInfo object from standard non-circular chromosome names from your genome |
| PICBimportfromexcel |
Import cluster object from an Excel file |
| PICBload |
Load and preprocess BAM files containing piRNA alignments |
| PICBloadfasta |
Get SeqInfo object from a fasta file |
| PICBoptimize |
Runs PICBbuild multiple times with provided parameters and returns optimization data frame. |
| PICBstrandanalysis |
Add sense/antisense ratio of unique piRNAs per piRNA cluster |
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