OSAT: Optimal Sample Assignment Tool

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Documentation for package ‘OSAT’ version 1.57.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BeadChip-class	Class '"BeadChip"'
BeadChip96ToMSA4MAP	Class '"MSAroboticPlate"'
BeadPlate-class	Class '"BeadPlate"'
cid-method	Class '"gContainer"'
create.experiment.setup	Class '"gExperimentSetup"'
create.optimized.setup	Create optimized setup
dim-method	Class '"gArray"'
exclude<-	Class '"gContainer"'
exclude<--method	Class '"gContainer"'
gArray-class	Class '"gArray"'
gAssembly-class	Class '"gAssembly"'
gc	R data object based on example file.
gContainer-class	Class '"gContainer"'
GenotypingChip	Class '"BeadChip"'
get.experiment.setup	Get experiment assignment after optimization.
get.gAssembly-method	Class '"gContainer"'
get.gAssembly-method	Class '"gExperimentSetup"'
getLayout	Class '"gArray"'
getLayout-method	Class '"BeadChip"'
getLayout-method	Class '"MSAroboticPlate"'
getLayout-method	Class '"gArray"'
getLayout-method	Class '"gAssembly"'
getLayout-method	Class '"gContainer"'
getLayout-method	Class '"gPlate"'
getLayout-method	Class '"gSlide"'
gExperimentSetup-class	Class '"gExperimentSetup"'
gPlate-class	Class '"gPlate"'
gs	R data object based on example file.
gSample-class	Class 'gSample'
gSetup	R data object based on example file.
gSetup2	R data object based on example file.
gSlide-class	Class '"gSlide"'
IlluminaBeadChip	Class '"BeadChip"'
IlluminaBeadChip24Plate	Class '"BeadPlate"'
IlluminaBeadChip48Plate	Class '"BeadPlate"'
IlluminaBeadChip96Plate	Class '"BeadPlate"'
initialize-method	Class '"MSAroboticPlate"'
initialize-method	Class '"gAssembly"'
initialize-method	Class '"gContainer"'
initialize-method	Class '"gExperimentSetup"'
initialize-method	Class '"gPlate"'
initialize-method	Class 'gSample'
initialize-method	Class '"gSlide"'
map.to.MSA	Class '"MSAroboticPlate"'
map.to.MSA-method	Class '"MSAroboticPlate"'
metadata	Class '"gArray"'
metadata-method	Class '"gArray"'
metadata-method	Class '"gAssembly"'
metadata-method	Class '"gContainer"'
metadata-method	Class '"gExperimentSetup"'
metadata<-	Class '"gArray"'
metadata<--method	Class '"gArray"'
metadata<--method	Class '"gAssembly"'
metadata<--method	Class '"gContainer"'
metadata<--method	Class '"gExperimentSetup"'
MSA4.plate	Class '"MSAroboticPlate"'
MSAroboticPlate-class	Class '"MSAroboticPlate"'
multi.barplot	multi.barplot
multi.chisq.test	multi.chisq.test
ncol-method	Class '"gArray"'
nrow-method	Class '"gArray"'
optimal.block	optimal.block
optimal.shuffle	optimal.shuffle
pheno	R data object based on example file.
plot-method	Methods for Function 'plot'
plot-methods	Methods for Function 'plot'
predefined	Show predefined objects in the package.
QC	QC
samples-method	Class '"gExperimentSetup"'
setup.container	Class '"gContainer"'
setup.sample	Class 'gSample'
show-method	Class '"MSAroboticPlate"'
show-method	Class '"gAssembly"'
show-method	Class '"gContainer"'
show-method	Class '"gExperimentSetup"'
show-method	Class '"gPlate"'
show-method	Class 'gSample'
show-method	Class '"gSlide"'
summary	Class 'gSample'
summary-method	Class '"gExperimentSetup"'
summary-method	Class 'gSample'