Package: NanoStringNCTools
Title: NanoString nCounter Tools
Description: Tools for NanoString Technologies nCounter Technology.  Provides support for reading RCC files into an ExpressionSet
             derived object.  Also includes methods for QC and normalizaztion of NanoString data.
Version: 1.17.2
Encoding: UTF-8
Authors@R: c(person("Patrick", "Aboyoun", role = c("aut")), 
             person("Nicole", "Ortogero", email = "nortogero@nanostring.com", role = c("aut")), 
             person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre")),
             person("Zhi", "Yang", role = c("ctb")))
Depends: R (>= 3.6), Biobase, S4Vectors, ggplot2
Imports: BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes,
        grDevices, IRanges, methods, pheatmap, RColorBrewer, stats,
        utils
Suggests: biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf
License: MIT
Collate: SignatureSet-class.R RccMetadata.R NanoStringRccSet-class.R
        NanoStringRccSet-validity.R NanoStringRccSet-accessors.R
        NanoStringRccSet-signatures.R NanoStringRccSet-subset.R
        NanoStringRccSet-utils.R NanoStringRccSet-summary.R
        NanoStringRccSet-qc.R NanoStringRccSet-normalize.R
        NanoStringRccSet-munge.R NanoStringRccSet-ggplot.R
        NanoStringRccSet-autoplot.R readRccFile.R readRlfFile.R
        readNanoStringRccSet.R writeNanoStringRccSet.R utils.R
biocViews: GeneExpression, Transcription, CellBasedAssays, DataImport,
        Transcriptomics, Proteomics, mRNAMicroarray,
        ProprietaryPlatforms, RNASeq
VignetteEngine: knitr
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/NanoStringNCTools
git_branch: devel
git_last_commit: d043c64
git_last_commit_date: 2025-09-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-07
NeedsCompilation: no
Packaged: 2025-10-07 21:13:44 UTC; biocbuild
Author: Patrick Aboyoun [aut],
  Nicole Ortogero [aut],
  Maddy Griswold [cre],
  Zhi Yang [ctb]
Maintainer: Maddy Griswold <mgriswold@nanostring.com>
Built: R 4.5.1; ; 2025-10-08 02:54:29 UTC; unix
