Package: MetCirc
Type: Package
Title: Navigating mass spectral similarity in high-resolution MS/MS
        metabolomics data metabolomics data
Version: 1.39.0
Date: 2024-10-16
Authors@R: c(person(given = "Thomas", family = "Naake",
    email = "thomasnaake@googlemail.com",
    role = c("aut","cre")),
  person(given = "Johannes", family = "Rainer",
    email = "johannes.rainer@eurac.edu",
    role = "ctb"),
  person(given = "Emmanuel", family = "Gaquerel",
    email = "emmanuel.gaquerel@ibmp-cnrs.unistra.fr", role = "aut"))
Author: Thomas Naake <thomasnaake@googlemail.com>, 
    Johannes Rainer <johannes.rainer@eurac.edu> and Emmanuel Gaquerel
    <emmanuel.gaquerel@ibmp-cnrs.unistra.fr>
Maintainer: Thomas Naake <thomasnaake@googlemail.com>
VignetteBuilder: knitr
Depends: R (>= 4.4), amap (>= 0.8), circlize (>= 0.4.16), scales (>=
        1.3.0), shiny (>= 1.8.1.1), Spectra (>= 1.15.3)
Imports: ggplot2 (>= 3.5.1), MsCoreUtils (>= 1.17.0), S4Vectors (>=
        0.43.1)
Suggests: BiocGenerics, graphics (>= 4.4), grDevices (>= 4.4), knitr
        (>= 1.48), testthat (>= 3.2.1.1)
biocViews: ShinyApps, Metabolomics, MassSpectrometry, Visualization
Description: MetCirc comprises a workflow to interactively explore 
  high-resolution MS/MS metabolomics data. MetCirc uses the Spectra object 
  infrastructure defined in the package Spectra that stores 
  MS/MS spectra. MetCirc offers functionality to calculate 
  similarity between precursors based on the normalised dot product, neutral
  losses or user-defined functions and 
  visualise similarities in a circular layout. Within the interactive framework
  the user can annotate MS/MS features based on their similarity to 
  (known) related MS/MS features. 
License: GPL (>= 3)
RoxygenNote: 7.2.2
git_url: https://git.bioconductor.org/packages/MetCirc
git_branch: devel
git_last_commit: 0414f89
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-04-27
NeedsCompilation: no
Packaged: 2025-04-27 20:49:19 UTC; biocbuild
Built: R 4.5.0; ; 2025-04-28 02:21:10 UTC; unix
