Visualize all edges within a KEGG pathway and overlay LINCS data

Documentation for package ‘KEGGlincs’ version 1.35.0

KEGGlincs-package	KEGGlincs: an R package designed to explore the edges in KEGG pathways
add_edge_data	Annotate KEGG edge mappings with user data
cyto_vis	Send graph to Cytoscape via CyREST
edge_mapping_info	Prepare edges for mapping
expand_KEGG_edges	Get detailed KEGG mapping information for each relation [edge] documented in KEGG
expand_KEGG_mappings	Get detailed KEGG mapping information for each map entity
generate_mappings	The 'boilerplate' for this package's desired graph style
get_fisher_info	Perform Fisher's Exact test for edges in pathway
get_graph_object	Generate graph object from nodes and edges
get_KGML	Download and parse KGML file
keggerize_edges	Add in edges to map documented in other pathways
KEGGlincs	KEGGlincs: an R package designed to explore the edges in KEGG pathways
KEGG_lincs	Combines all other package functions for one-step pathway visualization
KL_compare	Combines all other package functions for one-step cell line comparison
mapAttributes	cyREST utility functions
node_mapping_info	Prepare nodes for mapping
overlap_info	Get overlap information for pairs of gene knock-outs from LINCS data
path_genes_by_cell_type	See how many pathway gene knock-outs are available from data
refine_mappings	Refine pathway by cell type
tidy_edge	Tidy up pathway by combining edges inside of edge_mapping_info
toCytoscape	cyREST utility functions