checkSNV |
Check the validity of SNVs |
exportG4 |
Export Predicted G4s to a File |
exportMutG4 |
Export G4s and Associated Variant Information to File |
filterSNVImpact |
Filter SNV Impact GRanges Object Based on User-Defined Thresholds |
filterVarImpact |
Filter Variant Impact G4 Object Based on User-Defined Thresholds |
G4HunterDetect |
Detect G4 Sequences Using the G4Hunter Algorithm |
G4HunterScore |
Calculate the G4Hunter Score for a Given Sequence |
G4VarImpact |
Evaluate the Impact of Variants (SNVs, Indels, MNVs) on G4 Sequences |
loadSequence |
Load Genome Sequences |
loadVariant |
Load Small Variant Data from VCF or MAF Files |
plotG4Info |
Plot Basic Statistics of G4s Detected by the G4HunterDetect Function |
plotImpactedG4 |
Sequence Logo of the G4 Sequence and Its Mutant Counterpart |
plotImpactSeq |
Visualize the variants in G4 sequence |
plotSNVImpact |
Plot the Impact of SNVs on G4Hunter Scores |
plotVarImpact |
Plot the Impact of Variants on G4 Formation |
snp_gr |
Single Nucleotide Polymorphisms GRanges Object |
SNVImpactG4 |
Evaluate the Impact of SNVs on G4 Sequences |
snv_gr |
Single Nucleotide Variant GRanges Object |