EBcoexpress for Differential Co-Expression Analysis

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Documentation for package ‘EBcoexpress’ version 1.53.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Code demos. Use demo() to run them.

Help Pages

bwmc	Basic utilities for the EBcoexpress package
crit.fun	Basic utilities for the EBcoexpress package
ebCoexpressFullTCAECM	Functions to run single-study analyses
ebCoexpressMeta	A function for DC meta-analysis that combines individual study analyses
ebCoexpressOneStep	Functions to run single-study analyses
ebCoexpressZeroStep	Functions to run single-study analyses
fiftyGenes	The fiftyGenes expression matrix
initializeHP	Initializing Hyperparameters for EM
makeMyD	A function to convert the X expression matrix into the D correlation matrix
priorDiagnostic	Visual diagnostic for the EBcoexpress prior
rankMyGenes	A function to rank the genes by the number of DC pairs in which they appear
showNetwork	A function for looking at the co-expression among a small group of genes
showPair	A function for looking at a pair's differential co-expression