Convert segment data into a region by sample matrix to allow for other high level computational analyses.

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Documentation for package ‘CNTools’ version 1.65.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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CNSeg	Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods
CNSeg-class	Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods
diffBy	A filter that filters out features that do not differ by a set threshold between a pair of samples
diffBy-method	A filter that filters out features that do not differ by a set threshold between a pair of samples
genefilter-method	A method that filters feature based on reduced segment
genefilter-methods	A method that filters feature based on reduced segment
geneInfo	method that convert segment data into reduced segment matrix
getCor	Method that extends the cor function of stats to handle reduced segment data
getCor-method	Method that extends the cor function of stats to handle reduced segment data
getDist	A method that extends the generic function dist to handle reduced segemnts
getDist-method	A method that extends the generic function dist to handle reduced segemnts
getRS	method that convert segment data into reduced segment matrix
getRS-method	method that convert segment data into reduced segment matrix
madFilter	Method that filters reduced segment matrix by the mean absolute deviation
madFilter-method	Method that filters reduced segment matrix by the mean absolute deviation
rs	Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation
RS-class	Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation
rs-method	Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation
rs<-	Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation
rs<--method	Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation
sampleData	Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods
segBy	Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation
segBy-method	Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation
segList	Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods
segList-method	Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods
segList<-	Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods
segList<--method	Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods
show-method	Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods
show-method	Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation