Collection of simple tools for learning about Bioconductor Packages


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Documentation for package ‘BiocPkgTools’ version 1.27.9

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BiocPkgTools-package BiocPkgTools: Examine and analyze Bioconductor package metadata
.get_cre_orcid get the ORCID id from cre field of Authors@R in packageDescription result
.get_orcid_rec process employment data from ORCID
activitySince What are the issues, pulls, commits created since a date?
anacondaDownloadStats Get download statistics for Bioconductor packages distributed via Anaconda.
biocBuildEmail Create and copy e-mail package notification template to clipboard
biocBuildReport Tidy Bioconductor build report results
biocBuildReportDB Parse the Build Report tarball for a Bioconductor release
biocBuildStatusDB Download and parse the build status information for Bioconductor packages
biocDownloadStats Get Bioconductor download statistics
biocExplore Explore Bioconductor packages interactively
biocMaintained Bioconductor Maintained Packages
biocPkgList Get full Bioconductor software package listing, with details
biocPkgRanges Grab build report results from BUILD_STATUS_DB for a particular package range
BiocPkgTools BiocPkgTools: Examine and analyze Bioconductor package metadata
BiocPkgTools-cache Manage cache for BiocPkgTools
biocRevDepEmail Notify downstream maintainers of changes in upstream packages
buildClassDepData Retrieve Class relationships
buildClassDepFromPackage Retrieve Class relationships
buildClassDepGraph Retrieve Class relationships
buildPkgDependencyDataFrame Work with Bioconductor package dependencies
buildPkgDependencyIgraph Work with package dependencies as a graph
class-dependencies Retrieve Class relationships
CRANstatus Check the CRAN build report page and email a notification
firstInBioc When did a package enter Bioconductor?
generateBiocPkgDOI Generate a DOI for a Bioconductor package
getBiocVignette Download a Bioconductor vignette
getPackageInfo Generate needed information to create DOI from a package directory.
getPkgYearsInBioc Calculate the years in Bioconductor
get_bioc_data Get data from Bioconductor
get_cre_orcids get ORCID ids from cre fields of Authors@R in packageDescription results
githubDetails Get package details from GitHub
githubURLParts Extract GitHub user and repo name from GitHub URL
hasBiocMaint Bioconductor Maintained Packages
inducedSubgraphByPkgs Return a minimal subgraph based on package name(s)
latestPkgStats Summary of the latest package statistics
orcid_table get data.frame of employment info from orcid
pkgBiocDeps Look up a package's Bioconductor dependencies
pkgBiocRevDeps Obtain all the reverse dependencies for a Bioconductor package
pkgCombDependencyGain Calculate dependency gain achieved by excluding combinations of packages
pkgDepImports Report package imported functionality
pkgDepMetrics Report package dependency burden
pkgDownloadRank What is a package's download rank?
pkgDownloadStats Get Bioconductor download statistics for a package
pkgToolsCache Manage cache for BiocPkgTools
plotClassDep Retrieve Class relationships
plotClassDepData Retrieve Class relationships
plotClassDepGraph Retrieve Class relationships
print.repositoryStats Bioconductor Binary Repository Statistics
problemPage generate hyperlinked HTML for build reports for Bioc packages
repositoryStats Bioconductor Binary Repository Statistics
sentHistory Create and copy e-mail package notification template to clipboard
setCache Manage cache for BiocPkgTools
subgraphByDegree Subset graph by degree
summary.biocrevdeps Obtain all the reverse dependencies for a Bioconductor package
templatePath Obtain the location of available email templates